@ Ontology Change Report @ First ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/160/fypo.obo @ Second ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/159/fypo.obo @ File Written at 2013.11.27 at 12:41:42 PST @ Number of classes changed: 61 @ Number of classes added: 0 @Classes modified from previous --- Class Changed: http://www.geneontology.org/go#GO_1901292 label: nucleoside phosphate catabolic process - SubClassOf('nucleoside phosphate catabolic process' 'single-organism catabolic process') --- Class Changed: http://www.geneontology.org/go#GO_0051321 label: meiotic cell cycle + SubClassOf('meiotic cell cycle' ObjectSomeValueFrom('has_part' 'meiosis')) + EquivalentClasses('meiotic cell cycle' ObjectIntersectionOf('cell cycle' ObjectSomeValueFrom('has_part' 'meiosis')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0000196 label: abnormal forespore formation - SubClassOf('abnormal forespore formation' 'abnormal cell cycle process') --- Class Changed: http://www.geneontology.org/go#GO_0007531 label: mating type determination - SubClassOf('mating type determination' 'single organism reproductive process') --- Class Changed: http://www.geneontology.org/go#GO_0030476 label: ascospore wall assembly - SubClassOf('ascospore wall assembly' 'single organism reproductive process') --- Class Changed: http://www.geneontology.org/go#GO_0072691 label: initiation of premeiotic DNA replication - SubClassOf('initiation of premeiotic DNA replication' 'cellular process involved in reproduction') --- Class Changed: http://www.geneontology.org/go#GO_0031382 label: mating projection assembly - SubClassOf('mating projection assembly' 'single organism reproductive process') --- Class Changed: http://www.geneontology.org/go#GO_0048869 label: cellular developmental process + SubClassOf('cellular developmental process' 'developmental process') - SubClassOf('cellular developmental process' 'single-organism developmental process') --- Class Changed: http://www.geneontology.org/go#SO_0000645 label: antisense_primary_transcript - SubClassOf('antisense_primary_transcript' 'primary_transcript') --- Class Changed: http://www.geneontology.org/go#GO_0044255 label: cellular lipid metabolic process - SubClassOf('cellular lipid metabolic process' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#GO_1901293 label: nucleoside phosphate biosynthetic process - SubClassOf('nucleoside phosphate biosynthetic process' 'single-organism biosynthetic process') --- Class Changed: http://www.geneontology.org/go#GO_0000278 label: mitotic cell cycle + SubClassOf('mitotic cell cycle' ObjectSomeValueFrom('has_part' 'mitosis')) + EquivalentClasses('mitotic cell cycle' ObjectIntersectionOf('cell cycle' ObjectSomeValueFrom('has_part' 'mitosis')) ) --- Class Changed: http://www.geneontology.org/go#GO_0034293 label: sexual sporulation - SubClassOf('sexual sporulation' 'single organism reproductive process') --- Class Changed: http://www.geneontology.org/go#GO_0030261 label: chromosome condensation - SubClassOf('chromosome condensation' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#GO_0030242 label: peroxisome degradation - SubClassOf('peroxisome degradation' 'single-organism catabolic process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002931 label: increased poly(A) tail length - SubClassOf('increased poly(A) tail length' 'abnormal poly(A) tail length') - SubClassOf('increased poly(A) tail length' PATO_0000573) - EquivalentClasses('increased poly(A) tail length' ObjectIntersectionOf(PATO_0000573 ObjectSomeValueFrom('inheres_in' 'polyA_sequence')) ) - SubClassOf('increased poly(A) tail length' ObjectSomeValueFrom('inheres_in' 'polyA_sequence')) --- Class Changed: http://www.geneontology.org/go#GO_0044786 label: cell cycle DNA replication - SubClassOf('cell cycle DNA replication' 'single-organism biosynthetic process') --- Class Changed: http://www.geneontology.org/go#GO_0044107 label: cellular alcohol metabolic process - SubClassOf('cellular alcohol metabolic process' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#GO_0032120 label: ascospore-type prospore membrane assembly - SubClassOf('ascospore-type prospore membrane assembly' 'single organism reproductive process') --- Class Changed: http://www.geneontology.org/go#GO_0007533 label: mating type switching - SubClassOf('mating type switching' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#GO_0015980 label: energy derivation by oxidation of organic compounds - SubClassOf('energy derivation by oxidation of organic compounds' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#GO_0070717 label: poly-purine tract binding - SubClassOf('poly-purine tract binding' 'single-stranded RNA binding') --- Class Changed: http://www.geneontology.org/go#GO_0055086 label: nucleobase-containing small molecule metabolic process - SubClassOf('nucleobase-containing small molecule metabolic process' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#GO_0044710 label: single-organism metabolic process - SubClassOf('single-organism metabolic process' 'single-organism process') --- Class Changed: http://www.geneontology.org/go#GO_0006082 label: organic acid metabolic process - SubClassOf('organic acid metabolic process' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#GO_0048468 label: cell development + SubClassOf('cell development' 'single-organism developmental process') --- Class Changed: http://www.geneontology.org/go#GO_0044723 label: single-organism carbohydrate metabolic process - SubClassOf('single-organism carbohydrate metabolic process' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#GO_0008610 label: lipid biosynthetic process - SubClassOf('lipid biosynthetic process' 'single-organism biosynthetic process') --- Class Changed: http://www.geneontology.org/go#GO_0016570 label: histone modification - SubClassOf('histone modification' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#SO_0000610 label: polyA_sequence - SubClassOf('polyA_sequence' ObjectSomeValueFrom('adjacent_to' 'mRNA')) - SubClassOf('polyA_sequence' 'biological_region') --- Class Changed: http://www.geneontology.org/go#GO_0031321 label: ascospore-type prospore assembly - SubClassOf('ascospore-type prospore assembly' 'single organism reproductive process') - SubClassOf('ascospore-type prospore assembly' 'cell cycle process') --- Class Changed: http://www.geneontology.org/go#GO_0032989 label: cellular component morphogenesis + SubClassOf('cellular component morphogenesis' 'single-organism developmental process') --- Class Changed: http://www.geneontology.org/go#GO_0044712 label: single-organism catabolic process - SubClassOf('single-organism catabolic process' 'catabolic process') - SubClassOf('single-organism catabolic process' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#GO_0003729 label: mRNA binding - SubClassOf('mRNA binding' 'RNA binding') --- Class Changed: http://www.geneontology.org/go#FYPO_0002927 label: decreased poly(A) RNA binding - SubClassOf('decreased poly(A) RNA binding' 'decreased RNA binding') - SubClassOf('decreased poly(A) RNA binding' ObjectSomeValueFrom('inheres_in' 'poly(A) RNA binding')) - EquivalentClasses('decreased poly(A) RNA binding' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('inheres_in' 'poly(A) RNA binding')) ) --- Class Changed: http://www.geneontology.org/go#GO_0000753 label: cell morphogenesis involved in conjugation with cellular fusion - SubClassOf('cell morphogenesis involved in conjugation with cellular fusion' 'single organism reproductive process') --- Class Changed: http://www.geneontology.org/go#GO_0000963 label: mitochondrial RNA processing - SubClassOf('mitochondrial RNA processing' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#SO_0000234 label: mRNA - SubClassOf('mRNA' 'mature_transcript') --- Class Changed: http://www.geneontology.org/go#GO_0034637 label: cellular carbohydrate biosynthetic process - SubClassOf('cellular carbohydrate biosynthetic process' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002906 label: increased antisense primary transcript splicing - SubClassOf('increased antisense primary transcript splicing' 'increased RNA splicing') - SubClassOf('increased antisense primary transcript splicing' ObjectSomeValueFrom('towards' 'antisense_primary_transcript')) - SubClassOf('increased antisense primary transcript splicing' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('increased antisense primary transcript splicing' ObjectIntersectionOf(PATO_0002051 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'RNA splicing, via transesterification reactions with bulged adenosine as nucleophile') ObjectSomeValueFrom('towards' 'antisense_primary_transcript')) ) - SubClassOf('increased antisense primary transcript splicing' ObjectSomeValueFrom('inheres_in' 'RNA splicing, via transesterification reactions with bulged adenosine as nucleophile')) --- Class Changed: http://www.geneontology.org/go#GO_0016051 label: carbohydrate biosynthetic process - SubClassOf('carbohydrate biosynthetic process' 'single-organism biosynthetic process') --- Class Changed: http://www.geneontology.org/go#GO_0016236 label: macroautophagy - SubClassOf('macroautophagy' 'single-organism catabolic process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002929 label: abnormal poly(A) tail length - EquivalentClasses('abnormal poly(A) tail length' ObjectIntersectionOf(PATO_0000122 ObjectSomeValueFrom('inheres_in' 'polyA_sequence') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal poly(A) tail length' 'abnormal phenotype') - SubClassOf('abnormal poly(A) tail length' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal poly(A) tail length' ObjectSomeValueFrom('inheres_in' 'polyA_sequence')) - SubClassOf('abnormal poly(A) tail length' PATO_0000122) --- Class Changed: http://www.geneontology.org/go#GO_0006486 label: protein glycosylation - SubClassOf('protein glycosylation' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#GO_0000714 label: meiotic strand displacement - SubClassOf('meiotic strand displacement' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#GO_0042244 label: spore wall assembly - SubClassOf('spore wall assembly' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#GO_0044702 label: single organism reproductive process - SubClassOf('single organism reproductive process' 'reproductive process') - SubClassOf('single organism reproductive process' 'single-organism process') --- Class Changed: http://www.geneontology.org/go#GO_0000723 label: telomere maintenance - SubClassOf('telomere maintenance' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002928 label: normal poly(A) tail length - EquivalentClasses('normal poly(A) tail length' ObjectIntersectionOf(PATO_0000122 ObjectSomeValueFrom('inheres_in' 'polyA_sequence') ObjectSomeValueFrom('qualifier' PATO_0000461)) ) - SubClassOf('normal poly(A) tail length' PATO_0000122) - SubClassOf('normal poly(A) tail length' ObjectSomeValueFrom('qualifier' PATO_0000461)) - SubClassOf('normal poly(A) tail length' 'normal phenotype') - SubClassOf('normal poly(A) tail length' ObjectSomeValueFrom('inheres_in' 'polyA_sequence')) --- Class Changed: http://www.geneontology.org/go#GO_0006281 label: DNA repair - SubClassOf('DNA repair' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#GO_0007131 label: reciprocal meiotic recombination - SubClassOf('reciprocal meiotic recombination' 'single-organism metabolic process') --- Class Changed: http://www.geneontology.org/go#GO_0003727 label: single-stranded RNA binding - SubClassOf('single-stranded RNA binding' 'RNA binding') --- Class Changed: http://www.geneontology.org/go#GO_0008143 label: poly(A) RNA binding - SubClassOf('poly(A) RNA binding' 'mRNA binding') - SubClassOf('poly(A) RNA binding' 'poly-purine tract binding') --- Class Changed: http://www.geneontology.org/go#FYPO_0002930 label: decreased poly(A) tail length - EquivalentClasses('decreased poly(A) tail length' ObjectIntersectionOf(PATO_0000574 ObjectSomeValueFrom('inheres_in' 'polyA_sequence')) ) - SubClassOf('decreased poly(A) tail length' PATO_0000574) - SubClassOf('decreased poly(A) tail length' ObjectSomeValueFrom('inheres_in' 'polyA_sequence')) - SubClassOf('decreased poly(A) tail length' 'abnormal poly(A) tail length') --- Class Changed: http://www.geneontology.org/go#GO_0045026 label: plasma membrane fusion + SubClassOf('plasma membrane fusion' 'cellular process') - SubClassOf('plasma membrane fusion' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002926 label: abolished poly(A) RNA binding - SubClassOf('abolished poly(A) RNA binding' 'abolished RNA binding') - SubClassOf('abolished poly(A) RNA binding' ObjectSomeValueFrom('towards' 'poly(A) RNA binding')) - EquivalentClasses('abolished poly(A) RNA binding' ObjectIntersectionOf(PATO_0001558 ObjectSomeValueFrom('towards' 'poly(A) RNA binding')) ) --- Class Changed: http://www.geneontology.org/go#GO_1901659 label: glycosyl compound biosynthetic process - SubClassOf('glycosyl compound biosynthetic process' 'single-organism biosynthetic process') --- Class Changed: http://www.geneontology.org/go#GO_1901658 label: glycosyl compound catabolic process - SubClassOf('glycosyl compound catabolic process' 'single-organism catabolic process') --- Class Changed: http://www.geneontology.org/go#GO_0018158 label: protein oxidation - SubClassOf('protein oxidation' 'single-organism cellular process') --- Class Changed: http://www.geneontology.org/go#GO_0007275 label: multicellular organismal development + SubClassOf('multicellular organismal development' 'developmental process') - SubClassOf('multicellular organismal development' 'single-organism developmental process') --- Class Changed: http://www.geneontology.org/go#GO_0032543 label: mitochondrial translation - SubClassOf('mitochondrial translation' 'single-organism biosynthetic process') @New Classes